Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
Col3a1P08121 Gm5852-201ENSMUST00000194119 1021 ntBASIC14.47□□□□□ -0.09
Col3a1P08121 Gm38151-201ENSMUST00000195085 289 ntBASIC14.47□□□□□ -0.09
Col3a1P08121 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 AC113082.1-201ENSMUST00000217324 327 ntBASIC14.47□□□□□ -0.09
Col3a1P08121 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC14.47□□□□□ -0.09
Col3a1P08121 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Col3a1P08121 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
Col3a1P08121 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Col3a1P08121 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col3a1P08121 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
Col3a1P08121 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Col3a1P08121 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC14.46□□□□□ -0.09
Col3a1P08121 Gm16166-201ENSMUST00000118291 787 ntBASIC14.46□□□□□ -0.09
Col3a1P08121 Gm12856-201ENSMUST00000119471 1293 ntBASIC14.46□□□□□ -0.09
Col3a1P08121 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Gm23045-201ENSMUST00000175041 96 ntBASIC14.46□□□□□ -0.09
Col3a1P08121 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC14.46□□□□□ -0.09
Col3a1P08121 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC14.46□□□□□ -0.09
Col3a1P08121 AC153505.1-201ENSMUST00000218819 1071 ntBASIC14.46□□□□□ -0.09
Col3a1P08121 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC14.46□□□□□ -0.09
Col3a1P08121 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC14.46□□□□□ -0.09
Col3a1P08121 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC14.46□□□□□ -0.09
Col3a1P08121 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Gm14132-201ENSMUST00000117188 1719 ntBASIC14.46□□□□□ -0.09
Col3a1P08121 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col3a1P08121 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col3a1P08121 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col3a1P08121 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col3a1P08121 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.46□□□□□ -0.1
Col3a1P08121 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.45□□□□□ -0.1
Col3a1P08121 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Col3a1P08121 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Col3a1P08121 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Col3a1P08121 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Gm13888-201ENSMUST00000119148 422 ntBASIC14.45□□□□□ -0.1
Col3a1P08121 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC14.45□□□□□ -0.1
Col3a1P08121 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC14.45□□□□□ -0.1
Col3a1P08121 Gm37458-201ENSMUST00000194055 410 ntBASIC14.45□□□□□ -0.1
Col3a1P08121 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
Col3a1P08121 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Col3a1P08121 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Col3a1P08121 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Col3a1P08121 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Col3a1P08121 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Gm7537-201ENSMUST00000221660 1414 ntBASIC14.45□□□□□ -0.1
Col3a1P08121 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col3a1P08121 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm14193-201ENSMUST00000105067 153 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC14.44□□□□□ -0.1
Col3a1P08121 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC14.44□□□□□ -0.1
Col3a1P08121 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm22138-201ENSMUST00000158748 128 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm7940-201ENSMUST00000218195 769 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC14.44□□□□□ -0.1
Col3a1P08121 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Col3a1P08121 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Gm36970-201ENSMUST00000193688 1859 ntBASIC14.44□□□□□ -0.1
Col3a1P08121 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col3a1P08121 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Col3a1P08121 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 108.4 ms