Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Chd3B1AR17 Gm44260-201ENSMUST00000204946 2094 ntBASIC12□□□□□ -0.49
Chd3B1AR17 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Chd3B1AR17 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Gm43677-201ENSMUST00000198098 2378 ntBASIC12□□□□□ -0.49
Chd3B1AR17 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Chd3B1AR17 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Gm6506-201ENSMUST00000119775 1136 ntBASIC12□□□□□ -0.49
Chd3B1AR17 Gm14247-201ENSMUST00000120950 237 ntBASIC12□□□□□ -0.49
Chd3B1AR17 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Chd3B1AR17 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Chd3B1AR17 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC12□□□□□ -0.49
Chd3B1AR17 Gm44882-201ENSMUST00000205702 802 ntBASIC12□□□□□ -0.49
Chd3B1AR17 Gm8959-201ENSMUST00000213150 571 ntBASIC12□□□□□ -0.49
Chd3B1AR17 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12□□□□□ -0.49
Chd3B1AR17 Gm5847-201ENSMUST00000178959 1595 ntBASIC12□□□□□ -0.49
Chd3B1AR17 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Chd3B1AR17 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12□□□□□ -0.49
Chd3B1AR17 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm25881-201ENSMUST00000157783 103 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm19353-201ENSMUST00000184561 445 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm44136-201ENSMUST00000203819 1106 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Olfr1347-205ENSMUST00000220413 964 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Chd3B1AR17 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
Chd3B1AR17 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm9947-201ENSMUST00000067599 2920 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm14263-201ENSMUST00000117955 746 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm13045-201ENSMUST00000119019 712 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm7722-201ENSMUST00000120646 741 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Rprl1-201ENSMUST00000158050 327 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm4034-201ENSMUST00000187674 480 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Chd3B1AR17 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC11.99□□□□□ -0.49
Chd3B1AR17 AC133602.1-201ENSMUST00000227510 509 ntBASIC11.99□□□□□ -0.49
Chd3B1AR17 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Chd3B1AR17 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Chd3B1AR17 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 78.9 ms