Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ddx56Q9D0R4 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Gm37057-201ENSMUST00000192624 1916 ntBASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Gm18935-201ENSMUST00000212692 664 ntBASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ddx56Q9D0R4 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Gm25214-201ENSMUST00000104573 129 ntBASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Gm14832-201ENSMUST00000121289 322 ntBASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 AC123738.2-201ENSMUST00000223791 1899 ntBASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.91□□□□□ -0.34
Ddx56Q9D0R4 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ddx56Q9D0R4 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms