Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm15370-201ENSMUST00000117158 253 ntBASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm26083-201ENSMUST00000157904 193 ntBASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm2991-201ENSMUST00000173338 480 ntBASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm4857-201ENSMUST00000192718 785 ntBASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.48□□□□□ -0.41
Sh3rf1Q69ZI1 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Gm9431-201ENSMUST00000119765 1051 ntBASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Gm11591-201ENSMUST00000120063 702 ntBASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Gm7809-201ENSMUST00000153199 742 ntBASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 AC166051.1-201ENSMUST00000214313 210 ntBASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 AC132384.14-201ENSMUST00000219346 1147 ntBASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sh3rf1Q69ZI1 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 AC101945.2-201ENSMUST00000227886 1377 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms