Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
Trim28Q62318 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
Trim28Q62318 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Trim28Q62318 Gm12579-201ENSMUST00000118040 783 ntBASIC15.83■□□□□ 0.12
Trim28Q62318 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Gm8815-201ENSMUST00000173809 620 ntBASIC15.83■□□□□ 0.12
Trim28Q62318 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
Trim28Q62318 Gm38117-201ENSMUST00000194653 939 ntBASIC15.83■□□□□ 0.12
Trim28Q62318 Gm6905-201ENSMUST00000205729 511 ntBASIC15.83■□□□□ 0.12
Trim28Q62318 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Gm18556-201ENSMUST00000219748 1031 ntBASIC15.83■□□□□ 0.12
Trim28Q62318 CT009718.3-201ENSMUST00000221116 367 ntBASIC15.83■□□□□ 0.12
Trim28Q62318 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
Trim28Q62318 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Trim28Q62318 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim28Q62318 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Trim28Q62318 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Trim28Q62318 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC15.82■□□□□ 0.12
Trim28Q62318 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Trim28Q62318 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Gm12036-201ENSMUST00000120008 530 ntBASIC15.82■□□□□ 0.12
Trim28Q62318 Gm15432-201ENSMUST00000121106 195 ntBASIC15.82■□□□□ 0.12
Trim28Q62318 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Trim28Q62318 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim28Q62318 Gm9540-201ENSMUST00000188230 478 ntBASIC15.82■□□□□ 0.12
Trim28Q62318 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim28Q62318 Gm45909-201ENSMUST00000212413 1031 ntBASIC15.82■□□□□ 0.12
Trim28Q62318 CT009713.8-202ENSMUST00000224732 385 ntBASIC15.82■□□□□ 0.12
Trim28Q62318 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim28Q62318 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Trim28Q62318 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Gm18983-201ENSMUST00000222884 2729 ntBASIC15.82■□□□□ 0.12
Trim28Q62318 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim28Q62318 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim28Q62318 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim28Q62318 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC15.81■□□□□ 0.12
Trim28Q62318 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Trim28Q62318 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Gm22711-201ENSMUST00000116890 133 ntBASIC15.81■□□□□ 0.12
Trim28Q62318 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC15.81■□□□□ 0.12
Trim28Q62318 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Trim28Q62318 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC15.81■□□□□ 0.12
Trim28Q62318 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim28Q62318 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim28Q62318 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC15.81■□□□□ 0.12
Trim28Q62318 Gm4797-201ENSMUST00000219075 1283 ntBASIC15.81■□□□□ 0.12
Trim28Q62318 AC154849.4-201ENSMUST00000224868 365 ntBASIC15.81■□□□□ 0.12
Trim28Q62318 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC15.81■□□□□ 0.12
Trim28Q62318 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim28Q62318 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim28Q62318 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms