Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC14.46□□□□□ -0.09
Limch1Q3UH68 Gm14017-201ENSMUST00000121934 386 ntBASIC14.46□□□□□ -0.09
Limch1Q3UH68 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Limch1Q3UH68 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Limch1Q3UH68 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Limch1Q3UH68 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Limch1Q3UH68 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Limch1Q3UH68 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Limch1Q3UH68 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC14.46□□□□□ -0.1
Limch1Q3UH68 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Limch1Q3UH68 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Gm10782-202ENSMUST00000223775 1480 ntBASIC14.45□□□□□ -0.1
Limch1Q3UH68 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Gm7104-201ENSMUST00000179741 2532 ntBASIC14.45□□□□□ -0.1
Limch1Q3UH68 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Gm14132-201ENSMUST00000117188 1719 ntBASIC14.45□□□□□ -0.1
Limch1Q3UH68 Gm13736-201ENSMUST00000119272 253 ntBASIC14.45□□□□□ -0.1
Limch1Q3UH68 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Gm45186-201ENSMUST00000206874 478 ntBASIC14.45□□□□□ -0.1
Limch1Q3UH68 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
Limch1Q3UH68 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Limch1Q3UH68 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Limch1Q3UH68 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Gm12314-201ENSMUST00000118104 538 ntBASIC14.44□□□□□ -0.1
Limch1Q3UH68 Gm12012-201ENSMUST00000118857 1066 ntBASIC14.44□□□□□ -0.1
Limch1Q3UH68 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Limch1Q3UH68 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms