Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm8801-201ENSMUST00000173255 1064 ntBASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm42929-201ENSMUST00000198374 1286 ntBASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm8598-201ENSMUST00000221184 836 ntBASIC11.95□□□□□ -0.5
Col28a1Q2UY11 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm9823-201ENSMUST00000051212 327 ntBASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
Col28a1Q2UY11 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Gm18473-201ENSMUST00000220543 868 ntBASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Gm44260-201ENSMUST00000204946 2094 ntBASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col28a1Q2UY11 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col28a1Q2UY11 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms