Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm34023-201ENSMUST00000195539 217 ntBASIC13.59□□□□□ -0.23
Col6a1Q04857 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm18974-201ENSMUST00000221478 1031 ntBASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm270-201ENSMUST00000223010 976 ntBASIC13.59□□□□□ -0.23
Col6a1Q04857 AC174797.2-202ENSMUST00000225729 568 ntBASIC13.59□□□□□ -0.23
Col6a1Q04857 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm45643-201ENSMUST00000211364 1484 ntBASIC13.59□□□□□ -0.23
Col6a1Q04857 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Col6a1Q04857 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Gm42863-201ENSMUST00000197875 2958 ntBASIC13.59□□□□□ -0.23
Col6a1Q04857 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col6a1Q04857 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col6a1Q04857 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col6a1Q04857 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col6a1Q04857 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col6a1Q04857 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.58□□□□□ -0.23
Col6a1Q04857 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col6a1Q04857 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
Col6a1Q04857 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col6a1Q04857 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col6a1Q04857 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Col6a1Q04857 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC13.58□□□□□ -0.24
Col6a1Q04857 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
Col6a1Q04857 AC163667.3-201ENSMUST00000225774 222 ntBASIC13.58□□□□□ -0.24
Col6a1Q04857 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.58□□□□□ -0.24
Col6a1Q04857 CT030637.1-201ENSMUST00000228016 669 ntBASIC13.58□□□□□ -0.24
Col6a1Q04857 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Mir339-201ENSMUST00000083659 96 ntBASIC13.58□□□□□ -0.24
Col6a1Q04857 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col6a1Q04857 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
Col6a1Q04857 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col6a1Q04857 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC13.58□□□□□ -0.24
Col6a1Q04857 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col6a1Q04857 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col6a1Q04857 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.57□□□□□ -0.24
Col6a1Q04857 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm13315-201ENSMUST00000120376 991 ntBASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm25881-201ENSMUST00000157783 103 ntBASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col6a1Q04857 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC13.57□□□□□ -0.24
Col6a1Q04857 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms