Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.22□□□□□ -0.61
Cdh11P55288 Gm8227-201ENSMUST00000223306 571 ntBASIC11.22□□□□□ -0.61
Cdh11P55288 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Cdh11P55288 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Cdh11P55288 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Cdh11P55288 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
Cdh11P55288 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Cdh11P55288 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Cdh11P55288 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.21□□□□□ -0.61
Cdh11P55288 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.21□□□□□ -0.61
Cdh11P55288 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.21□□□□□ -0.61
Cdh11P55288 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.21□□□□□ -0.61
Cdh11P55288 Gm16379-201ENSMUST00000161469 348 ntBASIC11.21□□□□□ -0.61
Cdh11P55288 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.21□□□□□ -0.61
Cdh11P55288 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Gm8762-201ENSMUST00000193486 339 ntBASIC11.21□□□□□ -0.61
Cdh11P55288 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.21□□□□□ -0.61
Cdh11P55288 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.21□□□□□ -0.61
Cdh11P55288 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC11.21□□□□□ -0.61
Cdh11P55288 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.21□□□□□ -0.61
Cdh11P55288 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdh11P55288 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Cdh11P55288 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.2□□□□□ -0.62
Cdh11P55288 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC11.2□□□□□ -0.62
Cdh11P55288 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.2□□□□□ -0.62
Cdh11P55288 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.2□□□□□ -0.62
Cdh11P55288 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC11.2□□□□□ -0.62
Cdh11P55288 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC11.2□□□□□ -0.62
Cdh11P55288 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
Cdh11P55288 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC11.2□□□□□ -0.62
Cdh11P55288 Gm38266-201ENSMUST00000194931 421 ntBASIC11.2□□□□□ -0.62
Cdh11P55288 Gm43133-201ENSMUST00000197472 463 ntBASIC11.2□□□□□ -0.62
Cdh11P55288 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.2□□□□□ -0.62
Cdh11P55288 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Cdh11P55288 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdh11P55288 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms