Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Ercc3P49135 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Gm13142-201ENSMUST00000117213 1453 ntBASIC14.59□□□□□ -0.07
Ercc3P49135 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.59□□□□□ -0.07
Ercc3P49135 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Gm26083-201ENSMUST00000157904 193 ntBASIC14.59□□□□□ -0.07
Ercc3P49135 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Gm27320-201ENSMUST00000184892 109 ntBASIC14.59□□□□□ -0.07
Ercc3P49135 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Gm44967-201ENSMUST00000207047 631 ntBASIC14.59□□□□□ -0.07
Ercc3P49135 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.59□□□□□ -0.07
Ercc3P49135 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Ercc3P49135 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ercc3P49135 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Ercc3P49135 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Ercc3P49135 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ercc3P49135 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Gm2606-201ENSMUST00000100754 1002 ntBASIC14.58□□□□□ -0.08
Ercc3P49135 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Ercc3P49135 Gm12286-201ENSMUST00000119246 1002 ntBASIC14.58□□□□□ -0.08
Ercc3P49135 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC14.58□□□□□ -0.08
Ercc3P49135 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC14.58□□□□□ -0.08
Ercc3P49135 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC14.58□□□□□ -0.08
Ercc3P49135 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC14.58□□□□□ -0.08
Ercc3P49135 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Gzmn-202ENSMUST00000225535 989 ntBASIC14.58□□□□□ -0.08
Ercc3P49135 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Ercc3P49135 Matn2-203ENSMUST00000226766 3252 ntBASIC14.58□□□□□ -0.08
Ercc3P49135 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Ercc3P49135 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Ercc3P49135 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ercc3P49135 CT009757.3-201ENSMUST00000223367 2320 ntBASIC14.58□□□□□ -0.08
Ercc3P49135 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Ercc3P49135 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Ercc3P49135 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ercc3P49135 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Gm11930-201ENSMUST00000117788 190 ntBASIC14.57□□□□□ -0.08
Ercc3P49135 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC14.57□□□□□ -0.08
Ercc3P49135 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Gm27046-201ENSMUST00000182160 463 ntBASIC14.57□□□□□ -0.08
Ercc3P49135 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 CT009713.10-202ENSMUST00000225734 696 ntBASIC14.57□□□□□ -0.08
Ercc3P49135 AC154222.2-201ENSMUST00000225848 607 ntBASIC14.57□□□□□ -0.08
Ercc3P49135 Gm24136-201ENSMUST00000083374 165 ntBASIC14.57□□□□□ -0.08
Ercc3P49135 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC14.57□□□□□ -0.08
Ercc3P49135 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.57□□□□□ -0.08
Ercc3P49135 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ercc3P49135 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ercc3P49135 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Ercc3P49135 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.56□□□□□ -0.08
Ercc3P49135 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ercc3P49135 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms