Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Traf1P39428 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Gm23119-201ENSMUST00000158610 140 ntBASIC14.25□□□□□ -0.13
Traf1P39428 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC14.25□□□□□ -0.13
Traf1P39428 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Gm43138-201ENSMUST00000199123 708 ntBASIC14.25□□□□□ -0.13
Traf1P39428 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC14.25□□□□□ -0.13
Traf1P39428 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Traf1P39428 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Gm43045-201ENSMUST00000198725 2095 ntBASIC14.25□□□□□ -0.13
Traf1P39428 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC14.25□□□□□ -0.13
Traf1P39428 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.25□□□□□ -0.13
Traf1P39428 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Traf1P39428 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Mir6927-201ENSMUST00000184494 71 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm29615-201ENSMUST00000185371 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm28224-201ENSMUST00000186078 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm29001-201ENSMUST00000186177 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm28292-201ENSMUST00000186593 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm28101-201ENSMUST00000187608 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm29076-201ENSMUST00000187689 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm28302-201ENSMUST00000187931 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm28646-201ENSMUST00000188220 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm28205-201ENSMUST00000189177 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm29032-201ENSMUST00000189797 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm28695-201ENSMUST00000190300 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm37448-201ENSMUST00000192795 697 ntBASIC14.24□□□□□ -0.13
Traf1P39428 AC107638.1-201ENSMUST00000213690 1061 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Gm18730-201ENSMUST00000218038 343 ntBASIC14.24□□□□□ -0.13
Traf1P39428 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 Nsd1-205ENSMUST00000224693 852 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Traf1P39428 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Gm26035-201ENSMUST00000083065 308 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Pck2-205ENSMUST00000226352 2784 ntBASIC14.24□□□□□ -0.13
Traf1P39428 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC14.24□□□□□ -0.13
Traf1P39428 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Traf1P39428 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Traf1P39428 Gm8617-201ENSMUST00000118796 2222 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC14.23□□□□□ -0.13
Traf1P39428 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 AC154262.2-202ENSMUST00000225158 1331 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.23□□□□□ -0.13
Traf1P39428 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 CT009757.3-201ENSMUST00000223367 2320 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC14.23□□□□□ -0.13
Traf1P39428 Gm12266-201ENSMUST00000120311 962 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Gm9083-201ENSMUST00000120423 819 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Traf1P39428 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC14.23□□□□□ -0.13
Traf1P39428 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Gm27627-201ENSMUST00000183644 150 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms