Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm13722-201ENSMUST00000117964 3066 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm5940-201ENSMUST00000117582 1068 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm13316-201ENSMUST00000140537 691 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Il4-203ENSMUST00000140684 530 ntTSL 2 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Il4-204ENSMUST00000150568 605 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm29396-201ENSMUST00000185659 716 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm38158-201ENSMUST00000194617 339 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm7399-201ENSMUST00000032395 858 ntBASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Il4-201ENSMUST00000000889 590 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Tfpi2-201ENSMUST00000031674 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Prpf40aQ9R1C7 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gm7224-201ENSMUST00000121359 2066 ntBASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gm7046-201ENSMUST00000221351 977 ntBASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gm9823-201ENSMUST00000051212 327 ntBASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Prpf40aQ9R1C7 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Gm18227-201ENSMUST00000211082 1468 ntBASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
Prpf40aQ9R1C7 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms