Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cpsf3Q9QXK7 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cpsf3Q9QXK7 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Gm13296-201ENSMUST00000117854 997 ntBASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Gm14130-201ENSMUST00000118417 987 ntBASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cpsf3Q9QXK7 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Gm9176-201ENSMUST00000219955 1120 ntBASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cpsf3Q9QXK7 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Cpsf3Q9QXK7 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cpsf3Q9QXK7 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Cpsf3Q9QXK7 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.21□□□□□ -0.3
Cpsf3Q9QXK7 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cpsf3Q9QXK7 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC13.21□□□□□ -0.3
Cpsf3Q9QXK7 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cpsf3Q9QXK7 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Gm13996-201ENSMUST00000118456 430 ntBASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Rprl1-201ENSMUST00000158050 327 ntBASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC13.2□□□□□ -0.3
Cpsf3Q9QXK7 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms