Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Gm6397-201ENSMUST00000161973 1069 ntBASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Gm4034-201ENSMUST00000187674 480 ntBASIC16.81■□□□□ 0.28
Usp40Q8BWR4 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC16.81■□□□□ 0.28
Usp40Q8BWR4 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Gm10288-201ENSMUST00000084614 537 ntBASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Gm7551-201ENSMUST00000089593 1074 ntBASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Gm43570-201ENSMUST00000199951 3688 ntBASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp40Q8BWR4 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gm13461-201ENSMUST00000120980 662 ntBASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 AC125486.1-201ENSMUST00000218701 320 ntBASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gm38355-201ENSMUST00000192514 1570 ntBASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp40Q8BWR4 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm38094-201ENSMUST00000195864 2978 ntBASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm38228-201ENSMUST00000193169 1293 ntBASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm44126-201ENSMUST00000204831 514 ntBASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm9785-201ENSMUST00000062642 1006 ntBASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Gm45546-201ENSMUST00000211053 2394 ntBASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp40Q8BWR4 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usp40Q8BWR4 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms