Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Gm14247-201ENSMUST00000120950 237 ntBASIC14.49□□□□□ -0.09
Trim56Q80VI1 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.49□□□□□ -0.09
Trim56Q80VI1 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 AC154671.1-201ENSMUST00000228617 1578 ntBASIC14.48□□□□□ -0.09
Trim56Q80VI1 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Gm12997-201ENSMUST00000120207 640 ntBASIC14.48□□□□□ -0.09
Trim56Q80VI1 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.48□□□□□ -0.09
Trim56Q80VI1 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Trim56Q80VI1 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Gm2260-201ENSMUST00000184965 657 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Gm29199-201ENSMUST00000187766 775 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Gm18711-201ENSMUST00000199341 750 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 AC123619.2-202ENSMUST00000225097 1568 ntBASIC14.47□□□□□ -0.09
Trim56Q80VI1 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms