Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 CT025694.1-201ENSMUST00000226188 934 ntBASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubfd1Q78JW9 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm16481-201ENSMUST00000119074 1227 ntBASIC12□□□□□ -0.49
Ubfd1Q78JW9 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm17040-202ENSMUST00000170597 889 ntBASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm7003-201ENSMUST00000195089 312 ntBASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm18753-201ENSMUST00000201000 566 ntBASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm43962-201ENSMUST00000203898 190 ntBASIC12□□□□□ -0.49
Ubfd1Q78JW9 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 CU062626.3-201ENSMUST00000225522 1411 ntBASIC12□□□□□ -0.49
Ubfd1Q78JW9 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ubfd1Q78JW9 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm22133-201ENSMUST00000102082 109 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm28071-201ENSMUST00000190355 478 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm44882-201ENSMUST00000205702 802 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm18782-201ENSMUST00000209023 1399 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Ssr1-203ENSMUST00000225246 1825 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm28323-201ENSMUST00000186817 2499 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Gm27196-201ENSMUST00000184787 2582 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms