Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 AC157950.1-201ENSMUST00000217561 2168 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm2606-201ENSMUST00000100754 1002 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm16505-201ENSMUST00000179981 232 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm8176-201ENSMUST00000191297 1099 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm44405-201ENSMUST00000198952 126 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm7293-201ENSMUST00000216682 1007 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.49□□□□□ -0.09
Limch1Q3UH68 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
Limch1Q3UH68 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Limch1Q3UH68 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Gm31256-201ENSMUST00000194705 506 ntBASIC14.48□□□□□ -0.09
Limch1Q3UH68 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Gm3786-201ENSMUST00000202659 378 ntBASIC14.48□□□□□ -0.09
Limch1Q3UH68 Gm45925-201ENSMUST00000218882 744 ntBASIC14.48□□□□□ -0.09
Limch1Q3UH68 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Limch1Q3UH68 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 AC160405.1-201ENSMUST00000218207 1545 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 Gm18263-201ENSMUST00000220846 1928 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Mir3547-201ENSMUST00000175461 88 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Gm18304-201ENSMUST00000189162 546 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 Ighv1-60-201ENSMUST00000195816 405 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 Rps4l-202ENSMUST00000204242 789 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC14.47□□□□□ -0.09
Limch1Q3UH68 Gm19963-201ENSMUST00000208413 1255 ntBASIC14.47□□□□□ -0.09
Limch1Q3UH68 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms