Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 AC122811.1-201ENSMUST00000222257 2921 ntBASIC11.24□□□□□ -0.61
Scn1bP97952 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.24□□□□□ -0.61
Scn1bP97952 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Gm14719-201ENSMUST00000121891 340 ntBASIC11.24□□□□□ -0.61
Scn1bP97952 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC11.24□□□□□ -0.61
Scn1bP97952 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC11.24□□□□□ -0.61
Scn1bP97952 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Scn1bP97952 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Scn1bP97952 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.24□□□□□ -0.61
Scn1bP97952 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC11.23□□□□□ -0.61
Scn1bP97952 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Scn1bP97952 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
Scn1bP97952 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm44260-201ENSMUST00000204946 2094 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm6447-201ENSMUST00000118905 835 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC11.23□□□□□ -0.61
Scn1bP97952 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm16215-201ENSMUST00000161990 637 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC11.23□□□□□ -0.61
Scn1bP97952 Mir7023-201ENSMUST00000185093 64 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Gm31326-201ENSMUST00000191856 1048 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Gm38297-201ENSMUST00000195122 1057 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Gm18916-201ENSMUST00000198264 1246 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm20949-201ENSMUST00000206478 952 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC11.23□□□□□ -0.61
Scn1bP97952 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Scn1bP97952 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Syt7-204ENSMUST00000223586 1344 ntBASIC11.23□□□□□ -0.61
Scn1bP97952 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Scn1bP97952 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Scn1bP97952 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Scn1bP97952 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms