Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.24□□□□□ -0.61
Cdh11P55288 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdh11P55288 Gm45053-201ENSMUST00000206112 2499 ntBASIC11.24□□□□□ -0.61
Cdh11P55288 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Arhgef3-204ENSMUST00000225949 3198 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Gm42943-201ENSMUST00000199676 3242 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
Cdh11P55288 Mir1247-201ENSMUST00000116706 82 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Gm8805-201ENSMUST00000117848 313 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC11.23□□□□□ -0.61
Cdh11P55288 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC11.23□□□□□ -0.61
Cdh11P55288 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Cdh11P55288 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC11.23□□□□□ -0.61
Cdh11P55288 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Cdh11P55288 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Cog3-203ENSMUST00000227473 4197 ntBASIC11.23□□□□□ -0.61
Cdh11P55288 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdh11P55288 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdh11P55288 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Cdh11P55288 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Gm22018-201ENSMUST00000104357 131 ntBASIC11.22□□□□□ -0.61
Cdh11P55288 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.22□□□□□ -0.61
Cdh11P55288 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
Cdh11P55288 Gm16479-201ENSMUST00000121706 932 ntBASIC11.22□□□□□ -0.61
Cdh11P55288 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Gm28693-202ENSMUST00000190758 331 ntBASIC11.22□□□□□ -0.61
Cdh11P55288 Gm42627-201ENSMUST00000197347 224 ntBASIC11.22□□□□□ -0.61
Cdh11P55288 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdh11P55288 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdh11P55288 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms