Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Cux1P53564 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Cux1P53564 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Cux1P53564 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Cux1P53564 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Cux1P53564 Gm17798-201ENSMUST00000182282 1035 ntBASIC18.62■□□□□ 0.57
Cux1P53564 Mir6407-201ENSMUST00000184510 101 ntBASIC18.62■□□□□ 0.57
Cux1P53564 Gm45120-201ENSMUST00000208880 408 ntBASIC18.62■□□□□ 0.57
Cux1P53564 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC18.62■□□□□ 0.57
Cux1P53564 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Cux1P53564 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cux1P53564 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Cux1P53564 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC18.61■□□□□ 0.57
Cux1P53564 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Acot6-202ENSMUST00000222921 3622 ntBASIC18.61■□□□□ 0.57
Cux1P53564 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Cux1P53564 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Cux1P53564 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Cux1P53564 Gm9796-201ENSMUST00000062249 2250 ntBASIC18.61■□□□□ 0.57
Cux1P53564 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Gm44315-201ENSMUST00000203041 219 ntBASIC18.61■□□□□ 0.57
Cux1P53564 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC18.61■□□□□ 0.57
Cux1P53564 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Cux1P53564 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Adra1a-206ENSMUST00000225182 2337 ntBASIC18.61■□□□□ 0.57
Cux1P53564 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Cux1P53564 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Gm18983-201ENSMUST00000222884 2729 ntBASIC18.61■□□□□ 0.57
Cux1P53564 Gm44152-201ENSMUST00000205007 1691 ntBASIC18.61■□□□□ 0.57
Cux1P53564 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Cux1P53564 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cux1P53564 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Gm12030-201ENSMUST00000121917 223 ntBASIC18.6■□□□□ 0.57
Cux1P53564 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Gm29410-201ENSMUST00000188383 694 ntBASIC18.6■□□□□ 0.57
Cux1P53564 Gm6450-201ENSMUST00000200896 574 ntBASIC18.6■□□□□ 0.57
Cux1P53564 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Cux1P53564 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
Cux1P53564 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Cux1P53564 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cux1P53564 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cux1P53564 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC18.59■□□□□ 0.57
Cux1P53564 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC18.59■□□□□ 0.57
Cux1P53564 Gm37981-201ENSMUST00000194280 535 ntBASIC18.59■□□□□ 0.57
Cux1P53564 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Cux1P53564 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Cux1P53564 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC18.59■□□□□ 0.57
Cux1P53564 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Cux1P53564 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC18.59■□□□□ 0.57
Cux1P53564 Gm12628-201ENSMUST00000122193 382 ntBASIC18.59■□□□□ 0.57
Cux1P53564 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC18.59■□□□□ 0.57
Cux1P53564 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cux1P53564 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms