Protein–RNA interactions for Protein: P37913

Lig1, DNA ligase 1, mousemouse

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig1P37913 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lig1P37913 Gm43858-201ENSMUST00000199418 1778 ntBASIC14.02□□□□□ -0.16
Lig1P37913 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lig1P37913 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lig1P37913 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Lig1P37913 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Lig1P37913 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lig1P37913 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Lig1P37913 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC14.02□□□□□ -0.17
Lig1P37913 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.02□□□□□ -0.17
Lig1P37913 Mir1943-201ENSMUST00000158276 73 ntBASIC14.02□□□□□ -0.17
Lig1P37913 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC14.02□□□□□ -0.17
Lig1P37913 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Lig1P37913 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Gm3508-201ENSMUST00000186012 792 ntBASIC14.02□□□□□ -0.17
Lig1P37913 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC14.02□□□□□ -0.17
Lig1P37913 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC14.02□□□□□ -0.17
Lig1P37913 Gm21027-201ENSMUST00000219300 1236 ntBASIC14.02□□□□□ -0.17
Lig1P37913 CT009718.3-201ENSMUST00000221116 367 ntBASIC14.02□□□□□ -0.17
Lig1P37913 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Lig1P37913 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Lig1P37913 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Lig1P37913 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lig1P37913 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.01□□□□□ -0.17
Lig1P37913 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Gm6580-201ENSMUST00000117504 1357 ntBASIC14.01□□□□□ -0.17
Lig1P37913 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.01□□□□□ -0.17
Lig1P37913 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Lig1P37913 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.01□□□□□ -0.17
Lig1P37913 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC14.01□□□□□ -0.17
Lig1P37913 Gm23699-201ENSMUST00000158835 135 ntBASIC14.01□□□□□ -0.17
Lig1P37913 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
Lig1P37913 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.01□□□□□ -0.17
Lig1P37913 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC14.01□□□□□ -0.17
Lig1P37913 Gm17827-201ENSMUST00000211825 742 ntBASIC14.01□□□□□ -0.17
Lig1P37913 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Lig1P37913 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Lig1P37913 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lig1P37913 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Lig1P37913 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lig1P37913 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
Lig1P37913 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lig1P37913 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lig1P37913 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14□□□□□ -0.17
Lig1P37913 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC14□□□□□ -0.17
Lig1P37913 Gm13408-201ENSMUST00000119822 798 ntBASIC14□□□□□ -0.17
Lig1P37913 Gm11941-201ENSMUST00000119904 610 ntBASIC14□□□□□ -0.17
Lig1P37913 Gm13935-201ENSMUST00000121859 798 ntBASIC14□□□□□ -0.17
Lig1P37913 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC14□□□□□ -0.17
Lig1P37913 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Lig1P37913 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC14□□□□□ -0.17
Lig1P37913 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC14□□□□□ -0.17
Lig1P37913 Gm45118-201ENSMUST00000208928 825 ntBASIC14□□□□□ -0.17
Lig1P37913 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC14□□□□□ -0.17
Lig1P37913 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Gm21811-201ENSMUST00000096485 930 ntBASIC14□□□□□ -0.17
Lig1P37913 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lig1P37913 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms