Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col2a1P28481 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Col2a1P28481 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col2a1P28481 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col2a1P28481 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.8□□□□□ -0.2
Col2a1P28481 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col2a1P28481 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC13.8□□□□□ -0.2
Col2a1P28481 Gm12856-201ENSMUST00000119471 1293 ntBASIC13.8□□□□□ -0.2
Col2a1P28481 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC13.8□□□□□ -0.2
Col2a1P28481 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col2a1P28481 Gm22138-201ENSMUST00000158748 128 ntBASIC13.8□□□□□ -0.2
Col2a1P28481 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col2a1P28481 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col2a1P28481 Gm37458-201ENSMUST00000194055 410 ntBASIC13.8□□□□□ -0.2
Col2a1P28481 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC13.8□□□□□ -0.2
Col2a1P28481 Gm44506-201ENSMUST00000206278 965 ntBASIC13.8□□□□□ -0.2
Col2a1P28481 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col2a1P28481 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col2a1P28481 Gm37391-201ENSMUST00000194891 2318 ntBASIC13.79□□□□□ -0.2
Col2a1P28481 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col2a1P28481 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Col2a1P28481 Gm16166-201ENSMUST00000118291 787 ntBASIC13.79□□□□□ -0.2
Col2a1P28481 Gm11783-201ENSMUST00000119549 885 ntBASIC13.79□□□□□ -0.2
Col2a1P28481 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC13.79□□□□□ -0.2
Col2a1P28481 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 AC141438.2-201ENSMUST00000215068 271 ntBASIC13.79□□□□□ -0.2
Col2a1P28481 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC13.79□□□□□ -0.2
Col2a1P28481 AC171241.1-201ENSMUST00000228144 1166 ntBASIC13.79□□□□□ -0.2
Col2a1P28481 AC135114.1-201ENSMUST00000228682 270 ntBASIC13.79□□□□□ -0.2
Col2a1P28481 Gm44292-201ENSMUST00000205194 2364 ntBASIC13.79□□□□□ -0.2
Col2a1P28481 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col2a1P28481 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col2a1P28481 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col2a1P28481 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.78□□□□□ -0.2
Col2a1P28481 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col2a1P28481 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Gm4726-201ENSMUST00000135604 736 ntBASIC13.78□□□□□ -0.2
Col2a1P28481 Gm6019-201ENSMUST00000148369 736 ntBASIC13.78□□□□□ -0.2
Col2a1P28481 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Gm8365-201ENSMUST00000197334 648 ntBASIC13.78□□□□□ -0.2
Col2a1P28481 Gm43186-201ENSMUST00000198130 824 ntBASIC13.78□□□□□ -0.2
Col2a1P28481 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC13.78□□□□□ -0.2
Col2a1P28481 CT485607.1-201ENSMUST00000216100 85 ntBASIC13.78□□□□□ -0.2
Col2a1P28481 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC13.78□□□□□ -0.2
Col2a1P28481 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 CT009489.1-201ENSMUST00000227740 1893 ntBASIC13.78□□□□□ -0.2
Col2a1P28481 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC13.78□□□□□ -0.2
Col2a1P28481 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Col2a1P28481 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.78□□□□□ -0.2
Col2a1P28481 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col2a1P28481 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col2a1P28481 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
Col2a1P28481 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Col2a1P28481 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms