Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Lire1P11260 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC11.76□□□□□ -0.53
Lire1P11260 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.76□□□□□ -0.53
Lire1P11260 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
Lire1P11260 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Gm29608-201ENSMUST00000190444 463 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Gm37008-201ENSMUST00000195712 319 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Gm4959-201ENSMUST00000197271 1044 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Gm44364-201ENSMUST00000198368 141 ntBASIC11.76□□□□□ -0.53
Lire1P11260 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Gm17870-201ENSMUST00000219489 1174 ntBASIC11.76□□□□□ -0.53
Lire1P11260 AC173210.1-201ENSMUST00000222341 1131 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Lire1P11260 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Daam2-202ENSMUST00000224595 1926 ntBASIC11.76□□□□□ -0.53
Lire1P11260 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Anxa6-202ENSMUST00000108883 2489 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lire1P11260 Gimap8-202ENSMUST00000203083 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Lire1P11260 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.75□□□□□ -0.53
Lire1P11260 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Lire1P11260 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC11.75□□□□□ -0.53
Lire1P11260 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC11.75□□□□□ -0.53
Lire1P11260 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.75□□□□□ -0.53
Lire1P11260 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Gm15236-201ENSMUST00000117309 379 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm12537-201ENSMUST00000119266 1002 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm12070-201ENSMUST00000119551 1002 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm12671-201ENSMUST00000119978 1002 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm13292-201ENSMUST00000120014 1000 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm12403-201ENSMUST00000121384 959 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC11.75□□□□□ -0.53
Lire1P11260 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Gm10359-201ENSMUST00000180167 1002 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm12033-201ENSMUST00000180654 1002 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm5559-201ENSMUST00000180755 1002 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm4335-201ENSMUST00000182581 1004 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm27501-201ENSMUST00000183599 107 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.75□□□□□ -0.53
Lire1P11260 Gm37497-201ENSMUST00000195830 798 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm43118-201ENSMUST00000199149 775 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC11.75□□□□□ -0.53
Lire1P11260 AC073947.2-201ENSMUST00000215888 1130 ntBASIC11.75□□□□□ -0.53
Lire1P11260 CT573086.1-201ENSMUST00000227202 1074 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Gm16372-201ENSMUST00000073088 450 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Lire1P11260 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Lire1P11260 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Gm5620-201ENSMUST00000077991 1348 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC11.75□□□□□ -0.53
Lire1P11260 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC11.75□□□□□ -0.53
Lire1P11260 Lrtm1-203ENSMUST00000224760 3060 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Arhgef3-204ENSMUST00000225949 3198 ntBASIC11.75□□□□□ -0.53
Lire1P11260 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Lire1P11260 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lire1P11260 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 81.2 ms