Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
Hoxd3P09027 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 AC122539.3-201ENSMUST00000218355 1431 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm37737-201ENSMUST00000195013 1638 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 AC167669.2-201ENSMUST00000224417 1620 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm22323-201ENSMUST00000103832 109 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm13033-201ENSMUST00000117591 1057 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm11531-201ENSMUST00000117614 555 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm12058-201ENSMUST00000118614 437 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm13875-201ENSMUST00000120162 282 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm3650-201ENSMUST00000180600 747 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm27023-201ENSMUST00000182372 285 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm37201-201ENSMUST00000191845 523 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 C030032O16Rik-201ENSMUST00000196427 716 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC9.76□□□□□ -0.85
Hoxd3P09027 AC166095.1-201ENSMUST00000223731 1241 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 AC154305.4-201ENSMUST00000224520 614 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Olfr1260-201ENSMUST00000061830 933 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Hoxd3P09027 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Gm42995-201ENSMUST00000197047 1330 ntBASIC9.76□□□□□ -0.85
Hoxd3P09027 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC9.76□□□□□ -0.85
Hoxd3P09027 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Hoxd3P09027 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC9.75□□□□□ -0.85
Hoxd3P09027 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Hoxd3P09027 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC9.75□□□□□ -0.85
Hoxd3P09027 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC9.75□□□□□ -0.85
Hoxd3P09027 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC9.75□□□□□ -0.85
Hoxd3P09027 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC9.75□□□□□ -0.85
Hoxd3P09027 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Mir706-201ENSMUST00000102262 84 ntBASIC9.75□□□□□ -0.85
Hoxd3P09027 Mir877-201ENSMUST00000104738 85 ntBASIC9.75□□□□□ -0.85
Hoxd3P09027 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC9.75□□□□□ -0.85
Hoxd3P09027 Gm13736-201ENSMUST00000119272 253 ntBASIC9.75□□□□□ -0.85
Hoxd3P09027 Gm14525-201ENSMUST00000119649 893 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Hoxd3P09027 Gm7113-201ENSMUST00000120477 958 ntBASIC9.75□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 61.6 ms