Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Col3a1P08121 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Ntrk2-204ENSMUST00000224259 3049 ntBASIC14.53□□□□□ -0.08
Col3a1P08121 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Col3a1P08121 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Col3a1P08121 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Col3a1P08121 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Col3a1P08121 Gm15352-201ENSMUST00000118696 270 ntBASIC14.52□□□□□ -0.08
Col3a1P08121 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC14.52□□□□□ -0.08
Col3a1P08121 Mir8115-201ENSMUST00000184992 119 ntBASIC14.52□□□□□ -0.08
Col3a1P08121 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC14.52□□□□□ -0.08
Col3a1P08121 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC14.52□□□□□ -0.08
Col3a1P08121 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC14.52□□□□□ -0.08
Col3a1P08121 Gm10752-201ENSMUST00000218348 729 ntBASIC14.52□□□□□ -0.08
Col3a1P08121 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC14.52□□□□□ -0.08
Col3a1P08121 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col3a1P08121 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col3a1P08121 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col3a1P08121 CT009757.3-201ENSMUST00000223367 2320 ntBASIC14.52□□□□□ -0.09
Col3a1P08121 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col3a1P08121 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Col3a1P08121 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col3a1P08121 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col3a1P08121 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col3a1P08121 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Col3a1P08121 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col3a1P08121 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Col3a1P08121 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Gm7666-201ENSMUST00000146631 819 ntBASIC14.51□□□□□ -0.09
Col3a1P08121 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC14.51□□□□□ -0.09
Col3a1P08121 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Gm10731-201ENSMUST00000181171 448 ntBASIC14.51□□□□□ -0.09
Col3a1P08121 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Gm8365-201ENSMUST00000197334 648 ntBASIC14.51□□□□□ -0.09
Col3a1P08121 Gm44270-201ENSMUST00000203084 1234 ntBASIC14.51□□□□□ -0.09
Col3a1P08121 Gm7395-201ENSMUST00000216059 1045 ntBASIC14.51□□□□□ -0.09
Col3a1P08121 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Col3a1P08121 Gm18636-201ENSMUST00000218846 1066 ntBASIC14.51□□□□□ -0.09
Col3a1P08121 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Gm5537-201ENSMUST00000091117 1252 ntBASIC14.51□□□□□ -0.09
Col3a1P08121 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC14.51□□□□□ -0.09
Col3a1P08121 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.51□□□□□ -0.09
Col3a1P08121 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Col3a1P08121 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC14.51□□□□□ -0.09
Col3a1P08121 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Col3a1P08121 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
Col3a1P08121 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Col3a1P08121 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Col3a1P08121 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col3a1P08121 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Col3a1P08121 Gm15573-201ENSMUST00000119487 540 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC14.5□□□□□ -0.09
Col3a1P08121 Gm29499-201ENSMUST00000189151 486 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Gm28329-201ENSMUST00000191208 689 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Gm29171-201ENSMUST00000191397 486 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Gm45550-201ENSMUST00000209380 946 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Gm2553-201ENSMUST00000215986 605 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC14.5□□□□□ -0.09
Col3a1P08121 AC159103.1-201ENSMUST00000228325 429 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col3a1P08121 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Col3a1P08121 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col3a1P08121 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Col3a1P08121 Gm5053-201ENSMUST00000208361 1678 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col3a1P08121 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col3a1P08121 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC14.5□□□□□ -0.09
Col3a1P08121 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col3a1P08121 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col3a1P08121 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC14.5□□□□□ -0.09
Col3a1P08121 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col3a1P08121 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC14.5□□□□□ -0.09
Col3a1P08121 Gm15172-201ENSMUST00000118945 1046 ntBASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms