Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
Chd3B1AR17 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC12.05□□□□□ -0.48
Chd3B1AR17 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC12.05□□□□□ -0.48
Chd3B1AR17 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd3B1AR17 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm11628-201ENSMUST00000117568 171 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC12.04□□□□□ -0.48
Chd3B1AR17 AC154276.3-201ENSMUST00000227643 998 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm5706-201ENSMUST00000181525 993 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm27530-201ENSMUST00000184096 98 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm18038-201ENSMUST00000197900 485 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm43947-201ENSMUST00000203019 959 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Gm5369-201ENSMUST00000217499 588 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 AC131330.1-201ENSMUST00000227814 1015 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.04□□□□□ -0.48
Chd3B1AR17 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Chd3B1AR17 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd3B1AR17 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Chd3B1AR17 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC12.03□□□□□ -0.48
Chd3B1AR17 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC12.03□□□□□ -0.48
Chd3B1AR17 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Dhrs4-202ENSMUST00000226168 828 ntBASIC12.03□□□□□ -0.48
Chd3B1AR17 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Chd3B1AR17 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Chd3B1AR17 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Chd3B1AR17 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
Chd3B1AR17 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 69.8 ms