Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Gm14807-201ENSMUST00000116640 983 ntBASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Gm12164-201ENSMUST00000121695 551 ntBASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Nps-202ENSMUST00000210697 1082 ntTSL 5 BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 AC113082.1-201ENSMUST00000217324 327 ntBASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ddx54Q8K4L0 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 AC166836.1-201ENSMUST00000219933 1795 ntBASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm24844-201ENSMUST00000158679 127 ntBASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Gm13271-201ENSMUST00000094992 549 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC16.03■□□□□ 0.16
Ddx54Q8K4L0 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm10152-201ENSMUST00000193475 1344 ntBASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm15207-201ENSMUST00000119259 442 ntBASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm19891-201ENSMUST00000189771 303 ntBASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm5870-201ENSMUST00000196461 282 ntBASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm5714-201ENSMUST00000197343 566 ntBASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC16.02■□□□□ 0.16
Ddx54Q8K4L0 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ddx54Q8K4L0 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ddx54Q8K4L0 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Ddx54Q8K4L0 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 89 ms