Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim47Q8C0E3 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm37391-201ENSMUST00000194891 2318 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm14130-201ENSMUST00000118417 987 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm13996-201ENSMUST00000118456 430 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm13299-201ENSMUST00000133644 425 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm13307-202ENSMUST00000142990 425 ntTSL 5 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ighv5-7-201ENSMUST00000192302 244 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Olfr1248-201ENSMUST00000216129 1078 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
Trim47Q8C0E3 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm13296-201ENSMUST00000117854 997 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm32999-201ENSMUST00000192693 562 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm7003-201ENSMUST00000195089 312 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm8913-201ENSMUST00000209491 641 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm7619-201ENSMUST00000210649 1282 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 AC153974.2-201ENSMUST00000218577 1025 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Gm7993-201ENSMUST00000200970 1384 ntBASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trim47Q8C0E3 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms