Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Ube3dQ8BX13 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm5780-201ENSMUST00000217774 1834 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm5638-201ENSMUST00000118618 1258 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm4986-201ENSMUST00000119731 549 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm13297-201ENSMUST00000120205 934 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm2991-201ENSMUST00000173338 480 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm7584-201ENSMUST00000175829 940 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm38341-201ENSMUST00000195357 515 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm43758-201ENSMUST00000199500 367 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm45865-201ENSMUST00000211815 945 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm9257-201ENSMUST00000221254 232 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm7046-201ENSMUST00000221351 977 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Gm8227-201ENSMUST00000223306 571 ntBASIC11□□□□□ -0.65
Ube3dQ8BX13 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11□□□□□ -0.65
Ube3dQ8BX13 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC11□□□□□ -0.65
Ube3dQ8BX13 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Snord83b-201ENSMUST00000104546 94 ntBASIC10.99□□□□□ -0.65
Ube3dQ8BX13 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Ube3dQ8BX13 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms