Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm6335-201ENSMUST00000118081 1194 ntBASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm7816-201ENSMUST00000119884 1194 ntBASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm15542-201ENSMUST00000121585 1194 ntBASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm6039-201ENSMUST00000121667 1250 ntBASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 AC154252.2-201ENSMUST00000223593 767 ntBASIC10.67□□□□□ -0.7
Nkx3-1P97436 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Retreg1-206ENSMUST00000228306 1430 ntBASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm10176-201ENSMUST00000159707 2264 ntBASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm45342-201ENSMUST00000210903 1363 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm24231-201ENSMUST00000104315 133 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm9550-201ENSMUST00000161130 862 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm9211-201ENSMUST00000182882 975 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm3508-201ENSMUST00000186012 792 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm21027-201ENSMUST00000219300 1236 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm10702-201ENSMUST00000098929 1268 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Gm8617-201ENSMUST00000118796 2222 ntBASIC10.66□□□□□ -0.7
Nkx3-1P97436 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
Nkx3-1P97436 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms