Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.65□□□□□ -0.06
Ercc3P49135 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.65□□□□□ -0.06
Ercc3P49135 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ercc3P49135 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Ercc3P49135 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Ercc3P49135 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC14.64□□□□□ -0.07
Ercc3P49135 Gm14726-201ENSMUST00000120623 896 ntBASIC14.64□□□□□ -0.07
Ercc3P49135 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Gm28882-201ENSMUST00000185504 314 ntBASIC14.64□□□□□ -0.07
Ercc3P49135 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.64□□□□□ -0.07
Ercc3P49135 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC14.64□□□□□ -0.07
Ercc3P49135 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC14.64□□□□□ -0.07
Ercc3P49135 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.64□□□□□ -0.07
Ercc3P49135 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Ercc3P49135 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC14.64□□□□□ -0.07
Ercc3P49135 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Ercc3P49135 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC14.64□□□□□ -0.07
Ercc3P49135 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Ercc3P49135 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ercc3P49135 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC14.64□□□□□ -0.07
Ercc3P49135 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.63□□□□□ -0.07
Ercc3P49135 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Ercc3P49135 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC14.63□□□□□ -0.07
Ercc3P49135 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Gm11222-201ENSMUST00000119005 738 ntBASIC14.63□□□□□ -0.07
Ercc3P49135 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC14.63□□□□□ -0.07
Ercc3P49135 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Ercc3P49135 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC14.63□□□□□ -0.07
Ercc3P49135 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Ercc3P49135 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Ercc3P49135 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ercc3P49135 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ercc3P49135 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Ercc3P49135 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ercc3P49135 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Ercc3P49135 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ercc3P49135 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Ercc3P49135 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ercc3P49135 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.62□□□□□ -0.07
Ercc3P49135 Gm23119-201ENSMUST00000158610 140 ntBASIC14.62□□□□□ -0.07
Ercc3P49135 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ercc3P49135 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ercc3P49135 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Ercc3P49135 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms