Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RaraP11416 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RaraP11416 Gm5637-201ENSMUST00000153890 1119 ntBASIC13.32□□□□□ -0.28
RaraP11416 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
RaraP11416 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Gm25927-201ENSMUST00000175058 117 ntBASIC13.32□□□□□ -0.28
RaraP11416 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Gm38230-201ENSMUST00000193572 1159 ntBASIC13.32□□□□□ -0.28
RaraP11416 AC153961.1-201ENSMUST00000217760 385 ntBASIC13.32□□□□□ -0.28
RaraP11416 Gm4935-201ENSMUST00000221316 1198 ntBASIC13.32□□□□□ -0.28
RaraP11416 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RaraP11416 n-R5s195-201ENSMUST00000082891 119 ntBASIC13.32□□□□□ -0.28
RaraP11416 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RaraP11416 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC13.32□□□□□ -0.28
RaraP11416 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RaraP11416 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.31□□□□□ -0.28
RaraP11416 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
RaraP11416 Gm7553-201ENSMUST00000185805 1426 ntBASIC13.31□□□□□ -0.28
RaraP11416 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
RaraP11416 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RaraP11416 Gm42706-201ENSMUST00000199733 1910 ntBASIC13.31□□□□□ -0.28
RaraP11416 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RaraP11416 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC13.31□□□□□ -0.28
RaraP11416 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RaraP11416 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC13.31□□□□□ -0.28
RaraP11416 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC13.31□□□□□ -0.28
RaraP11416 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.31□□□□□ -0.28
RaraP11416 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.31□□□□□ -0.28
RaraP11416 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
RaraP11416 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC13.31□□□□□ -0.28
RaraP11416 AC153974.2-201ENSMUST00000218577 1025 ntBASIC13.31□□□□□ -0.28
RaraP11416 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Snora73a-201ENSMUST00000082453 205 ntBASIC13.31□□□□□ -0.28
RaraP11416 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC13.31□□□□□ -0.28
RaraP11416 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
RaraP11416 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
RaraP11416 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
RaraP11416 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RaraP11416 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RaraP11416 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
RaraP11416 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
RaraP11416 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
RaraP11416 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RaraP11416 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RaraP11416 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
RaraP11416 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC13.3□□□□□ -0.28
RaraP11416 Gm9431-201ENSMUST00000119765 1051 ntBASIC13.3□□□□□ -0.28
RaraP11416 Gm13342-201ENSMUST00000121055 207 ntBASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms