Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Lire1P11260 Gal3st2-201ENSMUST00000094663 2844 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC11.79□□□□□ -0.52
Lire1P11260 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC11.79□□□□□ -0.52
Lire1P11260 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 AC139350.1-201ENSMUST00000227064 1594 ntBASIC11.79□□□□□ -0.52
Lire1P11260 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Lire1P11260 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC11.78□□□□□ -0.52
Lire1P11260 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
Lire1P11260 AC157950.1-201ENSMUST00000217561 2168 ntBASIC11.78□□□□□ -0.52
Lire1P11260 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Gm4782-201ENSMUST00000168705 2046 ntBASIC11.78□□□□□ -0.52
Lire1P11260 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC11.78□□□□□ -0.52
Lire1P11260 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC11.78□□□□□ -0.52
Lire1P11260 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Gm43822-201ENSMUST00000200285 476 ntBASIC11.78□□□□□ -0.52
Lire1P11260 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.78□□□□□ -0.52
Lire1P11260 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC11.78□□□□□ -0.52
Lire1P11260 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Olfr1090-202ENSMUST00000215991 2103 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Lire1P11260 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.78□□□□□ -0.52
Lire1P11260 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Gm9755-201ENSMUST00000032981 1356 ntBASIC11.78□□□□□ -0.52
Lire1P11260 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Rdh11-201ENSMUST00000085254 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Lire1P11260 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC11.78□□□□□ -0.52
Lire1P11260 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Lire1P11260 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Lire1P11260 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Lire1P11260 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Gm12203-201ENSMUST00000118235 598 ntBASIC11.77□□□□□ -0.53
Lire1P11260 Gm12209-201ENSMUST00000120089 596 ntBASIC11.77□□□□□ -0.53
Lire1P11260 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC11.77□□□□□ -0.53
Lire1P11260 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC11.77□□□□□ -0.53
Lire1P11260 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC11.77□□□□□ -0.53
Lire1P11260 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
Lire1P11260 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
Lire1P11260 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lire1P11260 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC11.77□□□□□ -0.53
Lire1P11260 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC11.76□□□□□ -0.53
Lire1P11260 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.76□□□□□ -0.53
Lire1P11260 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.76□□□□□ -0.53
Lire1P11260 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms