Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col3a1P08121 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col3a1P08121 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC14.55□□□□□ -0.08
Col3a1P08121 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Col3a1P08121 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC14.55□□□□□ -0.08
Col3a1P08121 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC14.55□□□□□ -0.08
Col3a1P08121 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Col3a1P08121 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Col3a1P08121 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC14.55□□□□□ -0.08
Col3a1P08121 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Gm19287-201ENSMUST00000203190 358 ntBASIC14.55□□□□□ -0.08
Col3a1P08121 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Col3a1P08121 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col3a1P08121 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.54□□□□□ -0.08
Col3a1P08121 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC14.54□□□□□ -0.08
Col3a1P08121 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Col3a1P08121 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC14.54□□□□□ -0.08
Col3a1P08121 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Col3a1P08121 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Col3a1P08121 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC14.54□□□□□ -0.08
Col3a1P08121 Gm17831-201ENSMUST00000205579 900 ntBASIC14.54□□□□□ -0.08
Col3a1P08121 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC14.54□□□□□ -0.08
Col3a1P08121 AC122408.1-201ENSMUST00000218949 218 ntBASIC14.54□□□□□ -0.08
Col3a1P08121 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.54□□□□□ -0.08
Col3a1P08121 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Col3a1P08121 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.54□□□□□ -0.08
Col3a1P08121 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.54□□□□□ -0.08
Col3a1P08121 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Gm37348-201ENSMUST00000193104 1789 ntBASIC14.54□□□□□ -0.08
Col3a1P08121 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col3a1P08121 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Col3a1P08121 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Gm9129-201ENSMUST00000218173 1689 ntBASIC14.53□□□□□ -0.08
Col3a1P08121 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.53□□□□□ -0.08
Col3a1P08121 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Gm15207-201ENSMUST00000119259 442 ntBASIC14.53□□□□□ -0.08
Col3a1P08121 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC14.53□□□□□ -0.08
Col3a1P08121 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC14.53□□□□□ -0.08
Col3a1P08121 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC14.53□□□□□ -0.08
Col3a1P08121 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Col3a1P08121 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col3a1P08121 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 112.8 ms