Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx56Q9D0R4 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Ddx56Q9D0R4 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Gm13786-201ENSMUST00000122371 333 ntBASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Gm42937-201ENSMUST00000197360 752 ntBASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Gm9823-201ENSMUST00000051212 327 ntBASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 AC122197.2-201ENSMUST00000219196 1635 ntBASIC12.99□□□□□ -0.33
Ddx56Q9D0R4 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gm25043-201ENSMUST00000158604 212 ntBASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gm5186-201ENSMUST00000218781 920 ntBASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gm7046-201ENSMUST00000221351 977 ntBASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx56Q9D0R4 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Gm13392-201ENSMUST00000117708 150 ntBASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Gm4034-201ENSMUST00000187674 480 ntBASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Morn2-202ENSMUST00000227729 656 ntBASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx56Q9D0R4 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms