Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm15236-201ENSMUST00000117309 379 ntBASIC14.54□□□□□ -0.08
Trim56Q80VI1 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm26361-201ENSMUST00000158868 186 ntBASIC14.54□□□□□ -0.08
Trim56Q80VI1 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm32999-201ENSMUST00000192693 562 ntBASIC14.54□□□□□ -0.08
Trim56Q80VI1 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm8913-201ENSMUST00000209491 641 ntBASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm45484-201ENSMUST00000210310 1141 ntBASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.54□□□□□ -0.08
Trim56Q80VI1 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC14.54□□□□□ -0.08
Trim56Q80VI1 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm11989-201ENSMUST00000117240 672 ntBASIC14.53□□□□□ -0.08
Trim56Q80VI1 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm11362-201ENSMUST00000118838 850 ntBASIC14.53□□□□□ -0.08
Trim56Q80VI1 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm2383-201ENSMUST00000181461 807 ntBASIC14.53□□□□□ -0.08
Trim56Q80VI1 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm7003-201ENSMUST00000195089 312 ntBASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC14.53□□□□□ -0.08
Trim56Q80VI1 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC14.53□□□□□ -0.08
Trim56Q80VI1 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Trim56Q80VI1 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm27177-202ENSMUST00000183514 2703 ntBASIC14.53□□□□□ -0.08
Trim56Q80VI1 Gm37324-201ENSMUST00000194500 4504 ntBASIC14.53□□□□□ -0.08
Trim56Q80VI1 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim56Q80VI1 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Trim56Q80VI1 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Gm14132-201ENSMUST00000117188 1719 ntBASIC14.52□□□□□ -0.08
Trim56Q80VI1 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Trim56Q80VI1 Gm13296-201ENSMUST00000117854 997 ntBASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms