Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Gm43267-201ENSMUST00000199664 1796 ntBASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Trim40Q3UWA4 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Trim40Q3UWA4 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.58□□□□□ -0.55
Trim40Q3UWA4 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Trim40Q3UWA4 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Trim40Q3UWA4 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Gm12341-201ENSMUST00000119724 503 ntBASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Gm28631-201ENSMUST00000190740 334 ntBASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Gm44064-201ENSMUST00000204964 1087 ntBASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.58□□□□□ -0.56
Trim40Q3UWA4 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Trim40Q3UWA4 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm7558-201ENSMUST00000193221 1165 ntBASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Gm6218-201ENSMUST00000219812 628 ntBASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Trim40Q3UWA4 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms