Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Gm43818-201ENSMUST00000200605 466 ntBASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12□□□□□ -0.49
Col28a1Q2UY11 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm22331-201ENSMUST00000158066 136 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm28693-202ENSMUST00000190758 331 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm44397-201ENSMUST00000195950 113 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 AC098716.1-201ENSMUST00000213527 703 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 AC166051.1-201ENSMUST00000214313 210 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm7172-201ENSMUST00000218047 1152 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm7553-201ENSMUST00000185805 1426 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm15544-201ENSMUST00000118776 1531 ntBASIC12□□□□□ -0.49
Col28a1Q2UY11 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12□□□□□ -0.49
Col28a1Q2UY11 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col28a1Q2UY11 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm27514-201ENSMUST00000183692 110 ntBASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm16372-201ENSMUST00000073088 450 ntBASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms