Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC12.77□□□□□ -0.37
Sox9Q04887 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC12.77□□□□□ -0.37
Sox9Q04887 Gm18463-201ENSMUST00000207258 474 ntBASIC12.77□□□□□ -0.37
Sox9Q04887 AC154257.1-202ENSMUST00000224729 843 ntBASIC12.77□□□□□ -0.37
Sox9Q04887 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.77□□□□□ -0.37
Sox9Q04887 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC12.77□□□□□ -0.37
Sox9Q04887 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
Sox9Q04887 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC12.77□□□□□ -0.37
Sox9Q04887 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Sox9Q04887 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.77□□□□□ -0.37
Sox9Q04887 Gm9361-201ENSMUST00000198695 1507 ntBASIC12.77□□□□□ -0.37
Sox9Q04887 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Sox9Q04887 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.77□□□□□ -0.37
Sox9Q04887 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC12.76□□□□□ -0.37
Sox9Q04887 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Sox9Q04887 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm15352-201ENSMUST00000118696 270 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Gm15725-201ENSMUST00000119947 1090 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Gm5257-201ENSMUST00000121823 790 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm43186-201ENSMUST00000198130 824 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC12.76□□□□□ -0.37
Sox9Q04887 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Sox9Q04887 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC12.76□□□□□ -0.37
Sox9Q04887 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Sox9Q04887 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Sox9Q04887 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm37844-201ENSMUST00000192473 4097 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sox9Q04887 Gm42748-201ENSMUST00000199354 2341 ntBASIC12.76□□□□□ -0.37
Sox9Q04887 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Sox9Q04887 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.75□□□□□ -0.37
Sox9Q04887 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Sox9Q04887 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC12.75□□□□□ -0.37
Sox9Q04887 Gm11509-201ENSMUST00000117358 325 ntBASIC12.75□□□□□ -0.37
Sox9Q04887 Gm13916-201ENSMUST00000117368 628 ntBASIC12.75□□□□□ -0.37
Sox9Q04887 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.75□□□□□ -0.37
Sox9Q04887 Gm13549-201ENSMUST00000118339 796 ntBASIC12.75□□□□□ -0.37
Sox9Q04887 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sox9Q04887 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC12.75□□□□□ -0.37
Sox9Q04887 Gm15595-201ENSMUST00000120840 961 ntBASIC12.75□□□□□ -0.37
Sox9Q04887 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC12.75□□□□□ -0.37
Sox9Q04887 Gm13022-201ENSMUST00000121181 285 ntBASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 60.8 ms