Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Gm13047-201ENSMUST00000117116 815 ntBASIC13.66□□□□□ -0.22
Col6a1Q04857 Gm14921-201ENSMUST00000118643 908 ntBASIC13.66□□□□□ -0.22
Col6a1Q04857 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Gm15881-201ENSMUST00000148792 942 ntBASIC13.66□□□□□ -0.22
Col6a1Q04857 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.66□□□□□ -0.22
Col6a1Q04857 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 CT009713.8-202ENSMUST00000224732 385 ntBASIC13.66□□□□□ -0.22
Col6a1Q04857 Gm1821-202ENSMUST00000227415 750 ntBASIC13.66□□□□□ -0.22
Col6a1Q04857 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Gm37660-201ENSMUST00000192754 1732 ntBASIC13.66□□□□□ -0.22
Col6a1Q04857 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Col6a1Q04857 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.65□□□□□ -0.22
Col6a1Q04857 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm16296-201ENSMUST00000159905 325 ntBASIC13.65□□□□□ -0.22
Col6a1Q04857 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC13.65□□□□□ -0.22
Col6a1Q04857 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm21811-201ENSMUST00000096485 930 ntBASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC13.65□□□□□ -0.22
Col6a1Q04857 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Col6a1Q04857 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col6a1Q04857 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Col6a1Q04857 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.64□□□□□ -0.23
Col6a1Q04857 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13.64□□□□□ -0.23
Col6a1Q04857 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Col6a1Q04857 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.64□□□□□ -0.23
Col6a1Q04857 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Gm7851-201ENSMUST00000117574 323 ntBASIC13.64□□□□□ -0.23
Col6a1Q04857 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC13.64□□□□□ -0.23
Col6a1Q04857 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col6a1Q04857 Rmrp-201ENSMUST00000157463 271 ntBASIC13.64□□□□□ -0.23
Col6a1Q04857 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms