Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12616-201ENSMUST00000118594 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12624-201ENSMUST00000177615 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12621-201ENSMUST00000177760 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12615-201ENSMUST00000177970 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12622-201ENSMUST00000177975 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12627-201ENSMUST00000178412 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12625-201ENSMUST00000179122 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12614-201ENSMUST00000179586 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm12613-201ENSMUST00000180323 382 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm9022-201ENSMUST00000182482 992 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm29787-201ENSMUST00000222129 849 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 AC131330.1-201ENSMUST00000227814 1015 ntBASIC10.69□□□□□ -0.7
Nkx3-1P97436 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Nkx3-1P97436 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm11989-201ENSMUST00000117240 672 ntBASIC10.68□□□□□ -0.7
Nkx3-1P97436 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm11362-201ENSMUST00000118838 850 ntBASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm5616-201ENSMUST00000165252 384 ntBASIC10.68□□□□□ -0.7
Nkx3-1P97436 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm8741-201ENSMUST00000174736 384 ntBASIC10.68□□□□□ -0.7
Nkx3-1P97436 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 CT009718.3-201ENSMUST00000221116 367 ntBASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gm14267-206ENSMUST00000226870 1209 ntBASIC10.68□□□□□ -0.7
Nkx3-1P97436 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Nkx3-1P97436 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC10.67□□□□□ -0.7
Nkx3-1P97436 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC10.67□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms