Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm7940-201ENSMUST00000218195 769 ntBASIC18.69■□□□□ 0.58
Cux1P53564 CT025553.1-201ENSMUST00000226292 299 ntBASIC18.69■□□□□ 0.58
Cux1P53564 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cux1P53564 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cux1P53564 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cux1P53564 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cux1P53564 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 AC166836.1-201ENSMUST00000219933 1795 ntBASIC18.68■□□□□ 0.58
Cux1P53564 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Gm37861-201ENSMUST00000193534 2869 ntBASIC18.68■□□□□ 0.58
Cux1P53564 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cux1P53564 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cux1P53564 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC18.68■□□□□ 0.58
Cux1P53564 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC18.68■□□□□ 0.58
Cux1P53564 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Gm8531-201ENSMUST00000188319 893 ntBASIC18.68■□□□□ 0.58
Cux1P53564 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC18.68■□□□□ 0.58
Cux1P53564 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC18.68■□□□□ 0.58
Cux1P53564 Gm17877-201ENSMUST00000192578 814 ntBASIC18.68■□□□□ 0.58
Cux1P53564 Gm42518-201ENSMUST00000196277 938 ntBASIC18.68■□□□□ 0.58
Cux1P53564 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC18.68■□□□□ 0.58
Cux1P53564 AC122350.1-201ENSMUST00000228135 533 ntBASIC18.68■□□□□ 0.58
Cux1P53564 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
Cux1P53564 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cux1P53564 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC18.67■□□□□ 0.58
Cux1P53564 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Cux1P53564 Map1b-203ENSMUST00000223725 2669 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Cux1P53564 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC18.67■□□□□ 0.58
Cux1P53564 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Gm12516-201ENSMUST00000120819 385 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Gm13182-201ENSMUST00000122241 312 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC18.67■□□□□ 0.58
Cux1P53564 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Rn7s6-201ENSMUST00000175005 291 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC18.67■□□□□ 0.58
Cux1P53564 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC18.67■□□□□ 0.58
Cux1P53564 Gm9136-201ENSMUST00000193368 454 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC18.67■□□□□ 0.58
Cux1P53564 AC115122.1-201ENSMUST00000224850 1040 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Gm5451-201ENSMUST00000080545 579 ntBASIC18.67■□□□□ 0.58
Cux1P53564 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Gm37437-201ENSMUST00000194451 1937 ntBASIC18.67■□□□□ 0.58
Cux1P53564 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cux1P53564 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Cux1P53564 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Cux1P53564 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cux1P53564 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC18.66■□□□□ 0.58
Cux1P53564 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cux1P53564 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC18.66■□□□□ 0.58
Cux1P53564 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC18.66■□□□□ 0.58
Cux1P53564 Gm28937-201ENSMUST00000185413 695 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Gm29400-201ENSMUST00000187208 695 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Gm28662-201ENSMUST00000188446 695 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Gm28251-201ENSMUST00000188835 695 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Gm37318-201ENSMUST00000194325 695 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Gm38017-201ENSMUST00000194768 695 ntBASIC18.66■□□□□ 0.58
Cux1P53564 Gm37287-201ENSMUST00000195449 695 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms