Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.35□□□□□ -0.27
RaraP11416 Gm6007-201ENSMUST00000208170 823 ntBASIC13.35□□□□□ -0.27
RaraP11416 Gm40466-201ENSMUST00000212174 422 ntBASIC13.35□□□□□ -0.27
RaraP11416 Gm32390-201ENSMUST00000212713 1172 ntBASIC13.35□□□□□ -0.27
RaraP11416 AC132260.2-201ENSMUST00000224482 344 ntBASIC13.35□□□□□ -0.27
RaraP11416 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC13.35□□□□□ -0.27
RaraP11416 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
RaraP11416 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
RaraP11416 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.35□□□□□ -0.27
RaraP11416 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
RaraP11416 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC13.34□□□□□ -0.27
RaraP11416 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.34□□□□□ -0.27
RaraP11416 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Gm37744-201ENSMUST00000194616 1590 ntBASIC13.34□□□□□ -0.27
RaraP11416 Gm8131-201ENSMUST00000213783 1570 ntBASIC13.34□□□□□ -0.27
RaraP11416 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 Gm12314-201ENSMUST00000118104 538 ntBASIC13.34□□□□□ -0.27
RaraP11416 Gm13736-201ENSMUST00000119272 253 ntBASIC13.34□□□□□ -0.27
RaraP11416 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC13.34□□□□□ -0.27
RaraP11416 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Gm37102-201ENSMUST00000195740 1105 ntBASIC13.34□□□□□ -0.27
RaraP11416 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.34□□□□□ -0.27
RaraP11416 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 Gm45930-201ENSMUST00000221330 292 ntBASIC13.34□□□□□ -0.27
RaraP11416 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC13.34□□□□□ -0.27
RaraP11416 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.34□□□□□ -0.27
RaraP11416 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RaraP11416 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
RaraP11416 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC13.34□□□□□ -0.27
RaraP11416 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RaraP11416 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
RaraP11416 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RaraP11416 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Cog3-203ENSMUST00000227473 4197 ntBASIC13.33□□□□□ -0.28
RaraP11416 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC13.33□□□□□ -0.28
RaraP11416 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC13.33□□□□□ -0.28
RaraP11416 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Gm3890-201ENSMUST00000182416 207 ntBASIC13.33□□□□□ -0.28
RaraP11416 Gm4034-201ENSMUST00000187674 480 ntBASIC13.33□□□□□ -0.28
RaraP11416 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
RaraP11416 Gm9299-201ENSMUST00000206392 1140 ntBASIC13.33□□□□□ -0.28
RaraP11416 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC13.33□□□□□ -0.28
RaraP11416 Gm5904-201ENSMUST00000210286 865 ntBASIC13.33□□□□□ -0.28
RaraP11416 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Gm39404-201ENSMUST00000216350 313 ntBASIC13.33□□□□□ -0.28
RaraP11416 Gm45925-201ENSMUST00000218882 744 ntBASIC13.33□□□□□ -0.28
RaraP11416 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC13.33□□□□□ -0.28
RaraP11416 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
RaraP11416 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RaraP11416 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms