Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col1a1P11087 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col1a1P11087 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.29□□□□□ -0.12
Col1a1P11087 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Gm44443-201ENSMUST00000204396 5633 ntBASIC14.29□□□□□ -0.12
Col1a1P11087 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC14.29□□□□□ -0.12
Col1a1P11087 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Gm18367-201ENSMUST00000176139 600 ntBASIC14.29□□□□□ -0.12
Col1a1P11087 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC14.29□□□□□ -0.12
Col1a1P11087 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC14.29□□□□□ -0.12
Col1a1P11087 Gm17889-201ENSMUST00000198410 598 ntBASIC14.29□□□□□ -0.12
Col1a1P11087 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col1a1P11087 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC14.29□□□□□ -0.12
Col1a1P11087 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Col1a1P11087 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col1a1P11087 Gm7278-201ENSMUST00000119836 1401 ntBASIC14.29□□□□□ -0.12
Col1a1P11087 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Col1a1P11087 Gm37859-201ENSMUST00000195529 2173 ntBASIC14.28□□□□□ -0.12
Col1a1P11087 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Col1a1P11087 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Col1a1P11087 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 CT009489.1-201ENSMUST00000227740 1893 ntBASIC14.28□□□□□ -0.12
Col1a1P11087 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Gm37131-201ENSMUST00000192502 1561 ntBASIC14.28□□□□□ -0.12
Col1a1P11087 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC14.28□□□□□ -0.12
Col1a1P11087 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC14.28□□□□□ -0.12
Col1a1P11087 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Col1a1P11087 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Col1a1P11087 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Col1a1P11087 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Col1a1P11087 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col1a1P11087 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Col1a1P11087 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.27□□□□□ -0.12
Col1a1P11087 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.27□□□□□ -0.12
Col1a1P11087 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Col1a1P11087 Gm11801-201ENSMUST00000117807 746 ntBASIC14.27□□□□□ -0.12
Col1a1P11087 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC14.27□□□□□ -0.12
Col1a1P11087 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC14.27□□□□□ -0.12
Col1a1P11087 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Gm8531-201ENSMUST00000188319 893 ntBASIC14.27□□□□□ -0.12
Col1a1P11087 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC14.27□□□□□ -0.12
Col1a1P11087 Gm6108-201ENSMUST00000208365 367 ntBASIC14.27□□□□□ -0.12
Col1a1P11087 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col1a1P11087 Gm8325-201ENSMUST00000099086 453 ntBASIC14.27□□□□□ -0.12
Col1a1P11087 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col1a1P11087 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col1a1P11087 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col1a1P11087 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col1a1P11087 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms