Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Gm10288-201ENSMUST00000084614 537 ntBASIC14.79□□□□□ -0.04
Ube4aE9Q735 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC14.79□□□□□ -0.04
Ube4aE9Q735 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Gm8199-201ENSMUST00000121323 823 ntBASIC14.78□□□□□ -0.04
Ube4aE9Q735 Gm18893-201ENSMUST00000198416 943 ntBASIC14.78□□□□□ -0.04
Ube4aE9Q735 Gm5051-201ENSMUST00000204085 485 ntBASIC14.78□□□□□ -0.04
Ube4aE9Q735 AC098716.1-201ENSMUST00000213527 703 ntBASIC14.78□□□□□ -0.04
Ube4aE9Q735 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Gm9797-202ENSMUST00000218003 294 ntBASIC14.78□□□□□ -0.04
Ube4aE9Q735 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Gm37861-201ENSMUST00000193534 2869 ntBASIC14.78□□□□□ -0.04
Ube4aE9Q735 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ube4aE9Q735 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Gm37131-201ENSMUST00000192502 1561 ntBASIC14.77□□□□□ -0.04
Ube4aE9Q735 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.77□□□□□ -0.04
Ube4aE9Q735 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ube4aE9Q735 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ube4aE9Q735 AC154849.4-201ENSMUST00000224868 365 ntBASIC14.77□□□□□ -0.05
Ube4aE9Q735 AC121960.1-201ENSMUST00000227982 564 ntBASIC14.77□□□□□ -0.05
Ube4aE9Q735 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Gm37513-201ENSMUST00000194830 2268 ntBASIC14.77□□□□□ -0.05
Ube4aE9Q735 Gm38378-201ENSMUST00000195153 2268 ntBASIC14.77□□□□□ -0.05
Ube4aE9Q735 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ube4aE9Q735 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Gm10152-201ENSMUST00000193475 1344 ntBASIC14.76□□□□□ -0.05
Ube4aE9Q735 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Ube4aE9Q735 Gm13809-201ENSMUST00000117921 597 ntBASIC14.76□□□□□ -0.05
Ube4aE9Q735 Gm15131-201ENSMUST00000119124 595 ntBASIC14.76□□□□□ -0.05
Ube4aE9Q735 Gm6397-201ENSMUST00000161973 1069 ntBASIC14.76□□□□□ -0.05
Ube4aE9Q735 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms