Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm45266-201ENSMUST00000210111 2173 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm12314-201ENSMUST00000118104 538 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm13570-201ENSMUST00000140763 309 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm6082-201ENSMUST00000215204 454 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 AC113031.8-201ENSMUST00000227856 631 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Gm4864-201ENSMUST00000219894 1461 ntBASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vps28Q9D1C8 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Gm24231-201ENSMUST00000104315 133 ntBASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Gm25668-201ENSMUST00000157700 129 ntBASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Gm18615-201ENSMUST00000222919 1031 ntBASIC12.69□□□□□ -0.38
Vps28Q9D1C8 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vps28Q9D1C8 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Gm11930-201ENSMUST00000117788 190 ntBASIC12.68□□□□□ -0.38
Vps28Q9D1C8 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms