Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm12749-201ENSMUST00000122138 1159 ntBASIC13.88□□□□□ -0.19
Smc1aQ9CU62 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm17376-201ENSMUST00000166016 84 ntBASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Gm6082-201ENSMUST00000215204 454 ntBASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Smc1aQ9CU62 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Gm45484-201ENSMUST00000210310 1141 ntBASIC13.87□□□□□ -0.19
Smc1aQ9CU62 AC122305.4-201ENSMUST00000216159 1206 ntBASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Gm5781-201ENSMUST00000219792 443 ntBASIC13.87□□□□□ -0.19
Smc1aQ9CU62 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.87□□□□□ -0.19
Smc1aQ9CU62 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC13.86□□□□□ -0.19
Smc1aQ9CU62 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Smc1aQ9CU62 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms