Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim56Q80VI1 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm13665-201ENSMUST00000120830 528 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Rprl1-201ENSMUST00000158050 327 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm44262-201ENSMUST00000204969 372 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm19187-201ENSMUST00000206781 892 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm45598-202ENSMUST00000210719 986 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Crry-ps-201ENSMUST00000079090 1309 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim56Q80VI1 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.57□□□□□ -0.08
Trim56Q80VI1 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.56□□□□□ -0.08
Trim56Q80VI1 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Gm44651-201ENSMUST00000207343 372 ntBASIC14.56□□□□□ -0.08
Trim56Q80VI1 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 AC154252.2-201ENSMUST00000223593 767 ntBASIC14.56□□□□□ -0.08
Trim56Q80VI1 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim56Q80VI1 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.55□□□□□ -0.08
Trim56Q80VI1 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Gm9230-201ENSMUST00000188228 532 ntBASIC14.55□□□□□ -0.08
Trim56Q80VI1 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim56Q80VI1 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms