Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gm16202-201ENSMUST00000117532 544 ntBASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gm13342-201ENSMUST00000121055 207 ntBASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gm44364-201ENSMUST00000198368 141 ntBASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 AC173210.1-201ENSMUST00000222341 1131 ntBASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gm26035-201ENSMUST00000083065 308 ntBASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm7783-201ENSMUST00000204795 781 ntBASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Olfr284-202ENSMUST00000206647 966 ntBASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm6334-201ENSMUST00000207083 228 ntBASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Gm4935-201ENSMUST00000221316 1198 ntBASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Cts7-204ENSMUST00000225321 1257 ntBASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sh3rf1Q69ZI1 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gm8805-201ENSMUST00000117848 313 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gm25261-201ENSMUST00000157416 134 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gm38241-201ENSMUST00000192641 898 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gm18916-201ENSMUST00000198264 1246 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gm9368-201ENSMUST00000219348 831 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 A430010J10Rik-201ENSMUST00000054470 408 ntBASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms