Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gm25214-201ENSMUST00000104573 129 ntBASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gm9083-201ENSMUST00000120423 819 ntBASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gm44958-201ENSMUST00000203734 736 ntBASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gm45865-201ENSMUST00000211815 945 ntBASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gm30285-201ENSMUST00000214614 422 ntBASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gm44758-201ENSMUST00000206096 2068 ntBASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Gm23119-201ENSMUST00000158610 140 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Gm28882-201ENSMUST00000185504 314 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Gm43438-201ENSMUST00000198133 379 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Gm43179-201ENSMUST00000198797 275 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Cts7-204ENSMUST00000225321 1257 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 CT009757.3-201ENSMUST00000223367 2320 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Upf3bQ3ULL6 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Gm42937-201ENSMUST00000197360 752 ntBASIC13.23□□□□□ -0.29
Upf3bQ3ULL6 Gm3961-201ENSMUST00000204425 994 ntBASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms